3OPY Transferase date Sep 02, 2010
title Crystal Structure Of Pichia Pastoris Phosphofructokinase In State
authors N.Strater, S.Marek, E.B.Kuettner, M.Kloos, A.Keim, A.Bruser, J.Kir T.Schoneberg
compound source
Molecule: 6-Phosphofructo-1-Kinase Alpha-Subunit
Chain: A, C, E, G
Ec: 2.7.1.11
Organism_scientific: Pichia Pastoris
Organism_common: Yeast
Organism_taxid: 638632
Strain: Dsmz 70382

Molecule: 6-Phosphofructo-1-Kinase Beta-Subunit
Chain: B, D, F, H
Ec: 2.7.1.11

Organism_scientific: Pichia Pastoris
Organism_common: Yeast
Organism_taxid: 638632
Strain: Dsmz 70382

Molecule: 6-Phosphofructo-1-Kinase Gamma-Subunit
Chain: I, J, K, L
Ec: 2.7.1.11

Organism_scientific: Pichia Pastoris
Organism_common: Yeast
Organism_taxid: 638632
Strain: Dsmz 70382
symmetry Space Group: P 1 21 1
R_factor 0.200 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
161.658 188.303 231.560 90.00 92.85 90.00
method X-Ray Diffractionresolution 3.05 Å
ligand ATP, SO4 enzyme Transferase E.C.2.7.1.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G
  • 6-phosphofructokinase activi...


  • J, K, I, L


    Primary referenceMolecular architecture and structural basis of allosteric regulation of eukaryotic phosphofructokinases., Strater N, Marek S, Kuettner EB, Kloos M, Keim A, Bruser A, Kirchberger J, Schoneberg T, FASEB J. 2010 Sep 10. PMID:20833871
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2754 Kb) [Save to disk]
  • Biological Unit Coordinates (3opy.pdb1.gz) 2736 Kb
  • LPC: Ligand-Protein Contacts for 3OPY
  • CSU: Contacts of Structural Units for 3OPY
  • Structure Factors (2149 Kb)
  • Retrieve 3OPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OPY from S2C, [Save to disk]
  • Re-refined 3opy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OPY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OPY, from MSDmotif at EBI
  • Fold representative 3opy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3opy] [3opy_F] [3opy_H] [3opy_G] [3opy_B] [3opy_C] [3opy_I] [3opy_D] [3opy_J] [3opy_L] [3opy_E] [3opy_A] [3opy_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OPY
  • Community annotation for 3OPY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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