OCA Atlas for 3OPZ

3OPZ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

DIO, NA

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, C, B

Primary reference

Trypanosoma cruzi trans-sialidase in complex with a neutralizing antibody: structure/function studies towards the rational design of inhibitors., Buschiazzo A, Muia R, Larrieux N, Pitcovsky T, Mucci J, Campetella O, PLoS Pathog. 2012 Jan;8(1):e1002474. Epub 2012 Jan 5. PMID:22241998

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1016 Kb) [Save to disk]

Biological Unit Coordinates (3opz.pdb1.gz) 338 Kb

Biological Unit Coordinates (3opz.pdb2.gz) 343 Kb

Biological Unit Coordinates (3opz.pdb3.gz) 343 Kb

LPC: Ligand-Protein Contacts for 3OPZ

CSU: Contacts of Structural Units for 3OPZ

Structure Factors (575 Kb)

Retrieve 3OPZ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3OPZ from S2C, [Save to disk]

Re-refined 3opz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OPZ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3opz] [3opz_A] [3opz_B] [3opz_C] [3opz_H] [3opz_I] [3opz_J] [3opz_L] [3opz_M] [3opz_N]

SWISS-PROT database:

Domains found in 3OPZ: [IG_like] [IGv ] by SMART

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