3OQG	Hydrolase Dna	date	Sep 03, 2010
title	Restriction Endonuclease Hpy188i In Complex With Substrate D
authors	M.Sokolowska, H.Czapinska, M.Bochtler
compound		source
Molecule: Hpy188i Chain: A, B Engineered: Yes		Organism_scientific: Helicobacter Pylori Organism_common: Campylobacter Pylori Organism_taxid: 585532 Strain: 188 Gene: Hpy188ir Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Er2566 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15bmod
Molecule: Dna 5'-D(Gpaptpcptpgpapapc)-3' Chain: C Engineered: Yes		Synthetic: Yes Other_details: Synthetic Oligonucleotide
Molecule: Dna 5'-D(Gptptpcpapgpaptpc)-3' Chain: D Engineered: Yes		Synthetic: Yes Other_details: Synthetic Oligonucleotide
symmetry	Space Group: P 41 21 2	R_factor 0.165 R_Free 0.192
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.236 65.236 220.630 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	CL, MSE, NA	enzyme
Gene Ontology	Chain Function Process Component A, B endonuclease activity
Primary reference	Hpy188I-DNA pre- and post-cleavage complexes--snapshots of the GIY-YIG nuclease mediated catalysis., Sokolowska M, Czapinska H, Bochtler M, Nucleic Acids Res. 2010 Oct 8. PMID:20935048

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk] Biological Unit Coordinates (3oqg.pdb1.gz) 170 Kb LPC: Ligand-Protein Contacts for 3OQG CSU: Contacts of Structural Units for 3OQG Structure Factors (346 Kb) Retrieve 3OQG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OQG from S2C, [Save to disk] Re-refined 3oqg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OQG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OQG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OQG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3oqg_C] [3oqg_A] [3oqg_D] [3oqg] [3oqg_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3OQG

Community annotation for 3OQG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---