3OQM Transcription Transferase Dna date Sep 03, 2010
title Structure Of Ccpa-Hpr-Ser46p-Acka2 Complex
authors M.A.Schumacher, M.Sprehe, M.Bartholomae, W.Hillen, R.G.Brennan
compound source
Molecule: Catabolite Control Protein A
Chain: A, C
Synonym: Glucose-Resistance Amylase Regulator
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Alsa, Amyr, Bsu29740, Ccpa, Grar
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Phosphocarrier Protein Hpr
Chain: S, D
Synonym: Histidine-Containing Protein
Ec: 2.7.11.-
Engineered: Yes

Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Bsu13900, Hpr, Ptsh
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-D(Tptpgptpapapgpcpgptptpaptpcpa
Chain: E
Engineered: Yes


Molecule: 5'-D(Tptpgpaptpapapcpgpcptptpapcpa
Chain: B
Engineered: Yes

symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.240 103.540 176.650 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.96 Å
ligand SEP, SO4 enzyme Transferase E.C.2.7.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


S, D


Primary referenceStructures of carbon catabolite protein A-(HPr-Ser46-P) bound to diverse catabolite response element sites reveal the basis for high-affinity binding to degenerate DNA operators., Schumacher MA, Sprehe M, Bartholomae M, Hillen W, Brennan RG, Nucleic Acids Res. 2010 Nov 23. PMID:21106498
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (3oqm.pdb1.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 3OQM
  • CSU: Contacts of Structural Units for 3OQM
  • Structure Factors (242 Kb)
  • Retrieve 3OQM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OQM from S2C, [Save to disk]
  • Re-refined 3oqm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OQM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OQM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OQM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oqm] [3oqm_S] [3oqm_C] [3oqm_D] [3oqm_E] [3oqm_A] [3oqm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OQM: [HTH_LACI ] by SMART
  • Other resources with information on 3OQM
  • Community annotation for 3OQM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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