3ORH Transferase date Sep 07, 2010
title Human Guanidinoacetate N-Methyltransferase With Sah
authors A.Dong, H.Wu, H.Zeng, P.Loppnau, M.Sundstrom, C.H.Arrowsmith, A.M. A.Bochkarev, A.N.Plotnikov, Structural Genomics Consortium (S
compound source
Molecule: Guanidinoacetate N-Methyltransferase
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gamt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 64
R_factor 0.209 R_Free 0.236
length a length b length c angle alpha angle beta angle gamma
200.327 200.327 52.060 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.86 Å
ligand SAH enzyme Transferase E.C. BRENDA
note 3ORH supersedes 1ZX0
A, D, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk]
  • Biological Unit Coordinates (3orh.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3orh.pdb2.gz) 45 Kb
  • Biological Unit Coordinates (3orh.pdb3.gz) 44 Kb
  • Biological Unit Coordinates (3orh.pdb4.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3ORH
  • CSU: Contacts of Structural Units for 3ORH
  • Structure Factors (1486 Kb)
  • Retrieve 3ORH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ORH from S2C, [Save to disk]
  • Re-refined 3orh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ORH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ORH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ORH, from MSDmotif at EBI
  • Fold representative 3orh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3orh_C] [3orh_A] [3orh_D] [3orh_B] [3orh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ORH
  • Community annotation for 3ORH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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