3OSP	Transferase Dna	date	Sep 09, 2010
title	Structure Of Rev1
authors	D.T.Nair, A.K.Aggarwal
compound		source
Molecule: Dna Repair Protein Rev1 Chain: A Fragment: Rev1 (Unp Residues 305-738 Synonym: Reversionless Protein 1 Ec: 2.7.7.- Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Yeast Organism_taxid: 4932 Gene: O6339, Rev1, Yor346w Expression_system: Saccharomyces Cerevisiae Expression_system_common: Yeast Expression_system_taxid: 4932
Molecule: 5'-D(Tpapap(3dr)Pgptpapgpgpgpgpapgp 3'; Chain: T Synonym: Template Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Aptpcpcptpcpcpcpcptpap(Doc))-3' Chain: P Synonym: Primer Engineered: Yes		Synthetic: Yes
symmetry	Space Group: C 2 2 21	R_factor 0.204 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 180.021 200.236 55.725 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	3DR, DCP, DOC, MG	enzyme	Transferase E.C.2.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	DNA synthesis across an abasic lesion by yeast REV1 DNA polymerase., Nair DT, Johnson RE, Prakash L, Prakash S, Aggarwal AK, J Mol Biol. 2011 Feb 11;406(1):18-28. Epub 2010 Dec 15. PMID:21167175

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (3osp.pdb1.gz) 83 Kb LPC: Ligand-Protein Contacts for 3OSP CSU: Contacts of Structural Units for 3OSP Structure Factors (276 Kb) Retrieve 3OSP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OSP from S2C, [Save to disk] Re-refined 3osp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OSP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OSP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OSP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3osp_P] [3osp] [3osp_T] [3osp_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3OSP

Community annotation for 3OSP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---