3OTJ Hydrolase Hydrolase Inhibitor date Sep 12, 2010
title A Crystal Structure Of Trypsin Complexed With Bpti (Bovine P Trypsin Inhibitor) By X-Rayneutron Joint Refinement
authors K.Kawamura, T.Yamada, K.Kurihara, T.Tamada, R.Kuroki, I.Tanaka, H.Takahashi, N.Niimura
compound source
Molecule: Cationic Trypsin
Chain: E
Synonym: Beta-Trypsin, Alpha-Trypsin Chain 1, Alpha-Trypsin
Ec: 3.4.21.4
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: Purchased

Molecule: Pancreatic Trypsin Inhibitor
Chain: I
Synonym: Basic Protease Inhibitor, Bpti, Bpi, Aprotinin
Engineered: Yes

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: Purchased
symmetry Space Group: I 2 2 2
R_factor 0.198 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.604 85.361 122.551 90.00 90.00 90.00
method Neutron Diffraction; X-Ray Diffractionresolution 2.15 Å
ligand CA, SO4 enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
E


I


Primary referenceX-ray and neutron protein crystallographic analysis of the trypsin-BPTI complex., Kawamura K, Yamada T, Kurihara K, Tamada T, Kuroki R, Tanaka I, Takahashi H, Niimura N, Acta Crystallogr D Biol Crystallogr. 2011 Feb;67(Pt 2):140-8. Epub 2011, Jan 15. PMID:21245536
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (3otj.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 3OTJ
  • CSU: Contacts of Structural Units for 3OTJ
  • Structure Factors (585 Kb)
  • Retrieve 3OTJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OTJ from S2C, [Save to disk]
  • Re-refined 3otj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OTJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OTJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OTJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3otj] [3otj_I] [3otj_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3OTJ: [KU] [Tryp_SPc ] by SMART
  • Other resources with information on 3OTJ
  • Community annotation for 3OTJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science