OCA Atlas for 3OTK

3OTK

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

FUC, HTO, NA, NAG, UDP

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, D, A, C

Primary reference

Structural and mechanistic characterization of leukocyte-type core 2 beta1,6-N-acetylglucosaminyltransferase: a metal-ion-independent GT-A glycosyltransferase., Pak JE, Satkunarajah M, Seetharaman J, Rini JM, J Mol Biol. 2011 Dec 16;414(5):798-811. Epub 2011 Oct 26. PMID:22056345

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (482 Kb) [Save to disk]

Biological Unit Coordinates (3otk.pdb1.gz) 123 Kb

Biological Unit Coordinates (3otk.pdb2.gz) 122 Kb

Biological Unit Coordinates (3otk.pdb3.gz) 120 Kb

Biological Unit Coordinates (3otk.pdb4.gz) 122 Kb

Biological Unit Coordinates (3otk.pdb5.gz) 241 Kb

Biological Unit Coordinates (3otk.pdb6.gz) 237 Kb

LPC: Ligand-Protein Contacts for 3OTK

CSU: Contacts of Structural Units for 3OTK

Structure Factors (775 Kb)

Retrieve 3OTK in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3OTK from S2C, [Save to disk]

Re-refined 3otk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OTK in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3otk] [3otk_A] [3otk_B] [3otk_C] [3otk_D]

SWISS-PROT database:

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]