3OUH Oxidoreductase date Sep 14, 2010
title Phd2-R127 With Jnj41536014
authors H.Kim, R.Clark
compound source
Molecule: Egl Nine Homolog 1
Chain: A
Synonym: Hypoxia-Inducible Factor Prolyl Hydroxylase 2, Hif Hydroxylase 2, Hif-Ph2, Hph-2, Prolyl Hydroxylase Domain-Co Protein 2, Phd2, Sm-20;
Ec: 1.14.11.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egln1, C1orf12, Pnas-118, Pnas-137
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad-Smt
symmetry Space Group: P 63
R_factor 0.205 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.860 109.860 40.070 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.51 Å
ligand 014, FE2, SO4 BindingDB enzyme Oxidoreductase E.C.1.14.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (3ouh.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 3OUH
  • CSU: Contacts of Structural Units for 3OUH
  • Structure Factors (144 Kb)
  • Retrieve 3OUH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OUH from S2C, [Save to disk]
  • Re-refined 3ouh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OUH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OUH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OUH, from MSDmotif at EBI
  • Fold representative 3ouh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ouh_A] [3ouh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OUH: [P4Hc ] by SMART
  • Alignments of the sequence of 3OUH with the sequences similar proteins can be viewed for 3OUH's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3OUH
  • Community annotation for 3OUH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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