3OUI Oxidoreductase date Sep 14, 2010
title Phd2-R717 With 40787422
authors T.L.Arakaki, H.Kim
compound source
Molecule: Egl Nine Homolog 1
Chain: A
Synonym: Hypoxia-Inducible Factor Prolyl Hydroxylase 2, Hif Hydroxylase 2, Hif-Ph2, Hph-2, Prolyl Hydroxylase Domain-Co Protein 2, Phd2, Sm-20;
Ec: 1.14.11.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egln1, C1orf12, Pnas-118, Pnas-137
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad-Smt
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.006 67.795 79.092 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 42Z, ACT, FE2, PEG enzyme Oxidoreductase E.C.1.14.11 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (3oui.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 3OUI
  • CSU: Contacts of Structural Units for 3OUI
  • Structure Factors (351 Kb)
  • Retrieve 3OUI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OUI from S2C, [Save to disk]
  • Re-refined 3oui structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3OUI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 3OUI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OUI, from MSDmotif at EBI
  • Fold representative 3oui from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oui_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3OUI with the sequences similar proteins can be viewed for 3OUI's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
    • Other resources with information on 3OUI
  • Community annotation for 3OUI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2010
    Bioinformatics Unit
    Weizmann Institute of Science