3OUJ Oxidoreductase date Sep 14, 2010
title Phd2 With 2-Oxoglutarate
authors B.L.Staker, T.L.Arakaki
compound source
Molecule: Egl Nine Homolog 1
Chain: A
Synonym: Hypoxia-Inducible Factor Prolyl Hydroxylase 2, Hif Hydroxylase 2, Hif-Ph2, Hph-2, Prolyl Hydroxylase Domain-Co Protein 2, Phd2, Sm-20;
Ec: 1.14.11.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egln1, C1orf12, Pnas-118, Pnas-137
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad-Smt
symmetry Space Group: P 41
R_factor 0.203 R_Free 0.253
length a length b length c angle alpha angle beta angle gamma
72.298 72.298 46.496 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand AKG, FE2, SO4 BindingDB enzyme Oxidoreductase E.C.1.14.11 BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3ouj.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3OUJ
  • CSU: Contacts of Structural Units for 3OUJ
  • Structure Factors (157 Kb)
  • Retrieve 3OUJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OUJ from S2C, [Save to disk]
  • Re-refined 3ouj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OUJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OUJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OUJ, from MSDmotif at EBI
  • Fold representative 3ouj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ouj_A] [3ouj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OUJ: [P4Hc ] by SMART
  • Other resources with information on 3OUJ
  • Community annotation for 3OUJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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