3OUJ Oxidoreductase date Sep 14, 2010
title Phd2 With 2-Oxoglutarate
authors B.L.Staker, T.L.Arakaki
compound source
Molecule: Egl Nine Homolog 1
Chain: A
Synonym: Hypoxia-Inducible Factor Prolyl Hydroxylase 2, Hif Hydroxylase 2, Hif-Ph2, Hph-2, Prolyl Hydroxylase Domain-Co Protein 2, Phd2, Sm-20;
Ec: 1.14.11.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egln1, C1orf12, Pnas-118, Pnas-137
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad-Smt
symmetry Space Group: P 41
R_factor 0.203 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.298 72.298 46.496 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand AKG, FE2, SO4 BindingDB enzyme Oxidoreductase E.C.1.14.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3ouj.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3OUJ
  • CSU: Contacts of Structural Units for 3OUJ
  • Structure Factors (157 Kb)
  • Retrieve 3OUJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OUJ from S2C, [Save to disk]
  • Re-refined 3ouj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OUJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OUJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OUJ, from MSDmotif at EBI
  • Fold representative 3ouj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ouj_A] [3ouj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OUJ: [P4Hc ] by SMART
  • Alignments of the sequence of 3OUJ with the sequences similar proteins can be viewed for 3OUJ's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3OUJ
  • Community annotation for 3OUJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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