3OV6 Immune System date Sep 15, 2010
title Cd1c In Complex With Mpm (Mannosyl-Beta1-Phosphomycoketide)
authors L.Scharf, N.S.Li, A.J.Hawk, D.Garzon, T.Zhang, A.R.Kazen, S.Shah, E.J.Haddadian, A.Saghatelian, J.D.Faraldo-Gomez, S.C.Meredith, J.A.Piccirilli, E.J.Adams
compound source
Molecule: Beta-2-Microglobulin, T-Cell Surface Glycoprotein Cell Surface Glycoprotein Cd1b;
Chain: A
Fragment: Beta-2-Microglobulin
Synonym: Beta-2-Microglobulin Form Pi 5.3
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_strain: Bti-Tn-5b1-4
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pacgp67a
symmetry Space Group: P 21 21 21
R_factor 0.240 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.724 87.087 88.808 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand D12, MK0, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • cellular response to iron io...

  • Primary referenceThe 2.5 a structure of CD1c in complex with a mycobacterial lipid reveals an open groove ideally suited for diverse antigen presentation., Scharf L, Li NS, Hawk AJ, Garzon D, Zhang T, Fox LM, Kazen AR, Shah S, Haddadian EJ, Gumperz JE, Saghatelian A, Faraldo-Gomez JD, Meredith SC, Piccirilli JA, Adams EJ, Immunity. 2010 Dec 14;33(6):853-62. PMID:21167756
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (3ov6.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 3OV6
  • CSU: Contacts of Structural Units for 3OV6
  • Structure Factors (187 Kb)
  • Retrieve 3OV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OV6 from S2C, [Save to disk]
  • Re-refined 3ov6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OV6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OV6, from MSDmotif at EBI
  • Fold representative 3ov6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ov6] [3ov6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OV6: [IGc1 ] by SMART
  • Other resources with information on 3OV6
  • Community annotation for 3OV6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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