3OVJ Protein Fibril date Sep 16, 2010
title Structure Of An Amyloid Forming Peptide Klvffa From Amyloid Complex With Orange G
authors M.Landau, D.Eisenberg
compound source
Molecule: Klvffa Hexapeptide Segment From Amyloid Beta
Chain: A, B, C, D
Fragment: Klvffa (Unp Residues 687-692)
Engineered: Yes
Synthetic: Yes
Organism_taxid: 32630
Other_details: Klvffa (Residues 16-21) From Amyloid Beta, Synthesized
symmetry Space Group: P 1
R_factor 0.205 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
9.536 26.008 25.803 62.28 88.59 88.45
method X-Ray Diffractionresolution 1.80 Å
ligand ORA enzyme
Primary referenceTowards a pharmacophore for amyloid., Landau M, Sawaya MR, Faull KF, Laganowsky A, Jiang L, Sievers SA, Liu J, Barrio JR, Eisenberg D, PLoS Biol. 2011 Jun;9(6):e1001080. Epub 2011 Jun 14. PMID:21695112
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (3ovj.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 3OVJ
  • CSU: Contacts of Structural Units for 3OVJ
  • Structure Factors (27 Kb)
  • Retrieve 3OVJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OVJ from S2C, [Save to disk]
  • Re-refined 3ovj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OVJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OVJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OVJ, from MSDmotif at EBI
  • Fold representative 3ovj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ovj] [3ovj_C] [3ovj_D] [3ovj_B] [3ovj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OVJ
  • Community annotation for 3OVJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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