3OVL Protein Fibril date Sep 16, 2010
title Structure Of An Amyloid Forming Peptide Vqivyk From The Tau Complex With Orange G
authors M.Landau, D.Eisenberg
compound source
Molecule: Microtubule-Associated Protein
Chain: A
Fragment: Vqivyk (Residues 306-311)
Engineered: Yes
Synthetic: Yes
Other_details: Vqivyk (Residues 306-311) From Tau, Synthesi
symmetry Space Group: C 1 2 1
R_factor 0.259 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.056 4.831 22.127 90.00 102.98 90.00
method X-Ray Diffractionresolution 1.81 Å
ligand ACY, ORA, ZN enzyme
Primary referenceTowards a pharmacophore for amyloid., Landau M, Sawaya MR, Faull KF, Laganowsky A, Jiang L, Sievers SA, Liu J, Barrio JR, Eisenberg D, PLoS Biol. 2011 Jun;9(6):e1001080. Epub 2011 Jun 14. PMID:21695112
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (7 Kb) [Save to disk]
  • Biological Unit Coordinates (3ovl.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 3OVL
  • CSU: Contacts of Structural Units for 3OVL
  • Structure Factors (9 Kb)
  • Retrieve 3OVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OVL from S2C, [Save to disk]
  • Re-refined 3ovl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OVL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OVL, from MSDmotif at EBI
  • Fold representative 3ovl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ovl_A] [3ovl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OVL
  • Community annotation for 3OVL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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