3OVL Protein Fibril date Sep 16, 2010
title Structure Of An Amyloid Forming Peptide Vqivyk From The Tau Complex With Orange G
authors M.Landau, D.Eisenberg
compound source
Molecule: Microtubule-Associated Protein
Chain: A
Fragment: Vqivyk (Residues 306-311)
Engineered: Yes
Synthetic: Yes
Other_details: Vqivyk (Residues 306-311) From Tau, Synthesi
symmetry Space Group: C 1 2 1
R_factor 0.259 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.056 4.831 22.127 90.00 102.98 90.00
method X-Ray Diffractionresolution 1.81 Å
ligand ACY, ORA, ZN enzyme
Primary referenceTowards a pharmacophore for amyloid., Landau M, Sawaya MR, Faull KF, Laganowsky A, Jiang L, Sievers SA, Liu J, Barrio JR, Eisenberg D, PLoS Biol. 2011 Jun;9(6):e1001080. Epub 2011 Jun 14. PMID:21695112
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (7 Kb) [Save to disk]
  • Biological Unit Coordinates (3ovl.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 3OVL
  • CSU: Contacts of Structural Units for 3OVL
  • Structure Factors (9 Kb)
  • Retrieve 3OVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OVL from S2C, [Save to disk]
  • Re-refined 3ovl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OVL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OVL, from MSDmotif at EBI
  • Fold representative 3ovl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ovl_A] [3ovl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3OVL with the sequences similar proteins can be viewed for 3OVL's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3OVL
  • Community annotation for 3OVL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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