3OVQ Isomerase date Sep 17, 2010
title Crystal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
authors W.G.Liang, S.Y.Ouyang, N.Shaw, A.Joachimiak, R.G.Zhang, Z.J.Liu
compound source
Molecule: Ribulose-Phosphate 3-Epimerase
Chain: A, B
Synonym: D-Ribulose-5-Phosphate 3-Epimerase
Ec: 5.1.3.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rpe, Hussy-17
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 1 21 1
R_factor 0.147 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.785 43.535 72.269 90.00 94.88 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 5RP, FE2, XPE enzyme Isomerase E.C.5.1.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceConversion of D-ribulose 5-phosphate to D-xylulose 5-phosphate: new insights from structural and biochemical studies on human RPE., Liang W, Ouyang S, Shaw N, Joachimiak A, Zhang R, Liu ZJ, FASEB J. 2011 Feb;25(2):497-504. Epub 2010 Oct 5. PMID:20923965
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (3ovq.pdb1.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 3OVQ
  • CSU: Contacts of Structural Units for 3OVQ
  • Structure Factors (137 Kb)
  • Retrieve 3OVQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OVQ from S2C, [Save to disk]
  • Re-refined 3ovq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OVQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OVQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OVQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ovq_A] [3ovq] [3ovq_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OVQ
  • Community annotation for 3OVQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science