3OW4 Transferase Transferase Inhibitor date Sep 17, 2010
title Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As Po Akt Inhibitors
authors F.Dizon, W.Wu, G.P.A.Vigers, B.J.Brandhuber
compound source
Molecule: Rac-Alpha Serinethreonine-Protein Kinase
Chain: A, B
Synonym: Rac-Pk-Alpha, Protein Kinase B, Pkb, Proto-Oncogen
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akt1, Pkb, Rac
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Gsk 3 Beta Peptide
Chain: C, D
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor 0.193 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.427 55.823 91.354 90.00 103.93 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand SMY, TPO BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of dihydrothieno- and dihydrofuropyrimidines as potent pan Akt inhibitors., Bencsik JR, Xiao D, Blake JF, Kallan NC, Mitchell IS, Spencer KL, Xu R, Gloor SL, Martinson M, Risom T, Woessner RD, Dizon F, Wu WI, Vigers GP, Brandhuber BJ, Skelton NJ, Prior WW, Murray LJ, Bioorg Med Chem Lett. 2010 Dec 1;20(23):7037-41. Epub 2010 Sep 29. PMID:20971641
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (3ow4.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (3ow4.pdb2.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3OW4
  • CSU: Contacts of Structural Units for 3OW4
  • Structure Factors (166 Kb)
  • Retrieve 3OW4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OW4 from S2C, [Save to disk]
  • Re-refined 3ow4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OW4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OW4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OW4, from MSDmotif at EBI
  • Fold representative 3ow4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ow4] [3ow4_A] [3ow4_C] [3ow4_B] [3ow4_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3OW4: [S_TK_X] [S_TKc ] by SMART
  • Alignments of the sequence of 3OW4 with the sequences similar proteins can be viewed for 3OW4's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3OW4
  • Community annotation for 3OW4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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