3OW6 Chaperone date Sep 17, 2010
title Crystal Structure Of Hsp90 With N-Aryl-Benzimidazolone I
authors C.H.Park
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Synonym: Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Carcinoma Ny-Ren-38;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90aa1, Hsp90a, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.192 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.495 89.482 88.107 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MEX BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceN-aryl-benzimidazolones as novel small molecule HSP90 inhibitors., Bruncko M, Tahir SK, Song X, Chen J, Ding H, Huth JR, Jin S, Judge RA, Madar DJ, Park CH, Park CM, Petros AM, Tse C, Rosenberg SH, Elmore SW, Bioorg Med Chem Lett. 2010 Dec 15;20(24):7503-6. Epub 2010 Oct 12. PMID:21106457
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (3ow6.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3OW6
  • CSU: Contacts of Structural Units for 3OW6
  • Structure Factors (179 Kb)
  • Retrieve 3OW6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OW6 from S2C, [Save to disk]
  • Re-refined 3ow6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OW6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OW6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OW6, from MSDmotif at EBI
  • Fold representative 3ow6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ow6] [3ow6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3OW6 with the sequences similar proteins can be viewed for 3OW6's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3OW6
  • Community annotation for 3OW6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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