3OW9 Protein Fibril date Sep 17, 2010
title Structure Of An Amyloid Forming Peptide Klvffa From Amyloid Alternate Polymorph II
authors M.Landau, D.Eisenberg
compound source
Molecule: Klvffa Hexapeptide Segment From Amyloid Beta
Chain: A, B
Fragment: Klvffa (Unp Residues 687-692)
Engineered: Yes
Synthetic: Yes
Organism_taxid: 32630
Other_details: Klvffa (Residues 16-21) From Amyloid Beta, Synthesized
symmetry Space Group: C 1 2 1
R_factor 0.207 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.053 9.561 20.871 90.00 97.43 90.00
method X-Ray Diffractionresolution 1.80 Å
subcellular loc. Membrane localization by OPM: Secreted
out side
in side
Primary referenceMolecular basis for amyloid-{beta} polymorphism., Colletier JP, Laganowsky A, Landau M, Zhao M, Soriaga AB, Goldschmidt L, Flot D, Cascio D, Sawaya MR, Eisenberg D, Proc Natl Acad Sci U S A. 2011 Oct 11;108(41):16938-43. Epub 2011 Sep 23. PMID:21949245
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (6 Kb) [Save to disk]
  • Biological Unit Coordinates (3ow9.pdb1.gz) 6 Kb
  • CSU: Contacts of Structural Units for 3OW9
  • Structure Factors (18 Kb)
  • Retrieve 3OW9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OW9 from S2C, [Save to disk]
  • Re-refined 3ow9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OW9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OW9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OW9, from MSDmotif at EBI
  • Fold representative 3ow9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ow9] [3ow9_A] [3ow9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OW9
  • Community annotation for 3OW9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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