3OWB Chaperone date Sep 17, 2010
title Crystal Structure Of Hsp90 With Ver-49009
authors C.H.Park
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Synonym: Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Carcinoma Ny-Ren-38;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90aa1, Hsp90a, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.158 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.339 88.582 99.546 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand BSM enzyme
Primary referenceN-aryl-benzimidazolones as novel small molecule HSP90 inhibitors., Bruncko M, Tahir SK, Song X, Chen J, Ding H, Huth JR, Jin S, Judge RA, Madar DJ, Park CH, Park CM, Petros AM, Tse C, Rosenberg SH, Elmore SW, Bioorg Med Chem Lett. 2010 Dec 15;20(24):7503-6. Epub 2010 Oct 12. PMID:21106457
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3owb.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3OWB
  • CSU: Contacts of Structural Units for 3OWB
  • Structure Factors (142 Kb)
  • Retrieve 3OWB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OWB from S2C, [Save to disk]
  • View 3OWB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OWB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OWB, from MSDmotif at EBI
  • Fold representative 3owb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3owb_A] [3owb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OWB: [HATPase_c ] by SMART
  • Alignments of the sequence of 3OWB with the sequences similar proteins can be viewed for 3OWB's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3OWB
  • Community annotation for 3OWB at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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