3OWF Hydrolase date Sep 17, 2010
title Crystal Structure Of Staphylococcal Nuclease Variant Delta+P Cryogenic Temperature
authors J.L.Schlessman, V.Khangulov, A.Heroux, B.Garcia-Moreno E.
compound source
Molecule: Thermonuclease
Chain: A
Ec: 3.1.31.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Gene: Nuc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24a+
symmetry Space Group: P 32 2 1
R_factor 0.179 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.509 94.509 38.570 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.85 Å
ligand CA, PO4, THP enzyme Hydrolase E.C.3.1.31.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3owf.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 3OWF
  • CSU: Contacts of Structural Units for 3OWF
  • Structure Factors (115 Kb)
  • Retrieve 3OWF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OWF from S2C, [Save to disk]
  • Re-refined 3owf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OWF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OWF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OWF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3owf] [3owf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OWF: [SNc ] by SMART
  • Other resources with information on 3OWF
  • Community annotation for 3OWF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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