3OWY Isomerase date Sep 20, 2010
title Crystal Structure Of Ketosteroid Isomerase D40nc69sc81sc9 Cn From P. Putida With Bound Equilenin
authors P.A.Sigala, T.D.Fenn, D.Herschlag
compound source
Molecule: Steroid Delta-Isomerase
Chain: A, B, C, D, E, F, G, H
Synonym: Delta(5)-3-Ketosteroid Isomerase
Ec: 5.3.3.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
Gene: Ksi
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk223-3
symmetry Space Group: P 1 21 1
R_factor 0.280 R_Free 0.346
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.326 129.426 83.988 90.00 96.48 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand EQU, XCN enzyme Isomerase E.C.5.3.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceQuantitative, directional measurement of electric field heterogeneity in the active site of ketosteroid isomerase., Fafarman AT, Sigala PA, Schwans JP, Fenn TD, Herschlag D, Boxer SG, Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):E299-308. Epub 2012 Jan 17. PMID:22308339
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (344 Kb) [Save to disk]
  • Biological Unit Coordinates (3owy.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (3owy.pdb2.gz) 86 Kb
  • Biological Unit Coordinates (3owy.pdb3.gz) 88 Kb
  • Biological Unit Coordinates (3owy.pdb4.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 3OWY
  • CSU: Contacts of Structural Units for 3OWY
  • Structure Factors (549 Kb)
  • Retrieve 3OWY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OWY from S2C, [Save to disk]
  • Re-refined 3owy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OWY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OWY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OWY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3owy_G] [3owy_F] [3owy_A] [3owy_E] [3owy] [3owy_H] [3owy_D] [3owy_B] [3owy_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OWY
  • Community annotation for 3OWY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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