3OX8 Immune System date Sep 21, 2010
title Crystal Structure Of Hla A02:03 Bound To Hbv Core 18-27
authors J.Liu, Y.Chen, L.Lai, E.Ren
compound source
Molecule: Mhc Class I Antigen
Chain: A, D
Fragment: Unp Residues 25-299
Synonym: Class I Histocompatibility Antigen
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Mhc Hla-A02:03
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a

Molecule: Beta-2-Microglobulin
Chain: B, E
Synonym: Beta-2-Microglobulin Form Pi 5.3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Beta 2-Microglobulin, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a

Molecule: 10mer Peptide From Pre-Core-Protein
Chain: C, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Hepatitis B Virus
Organism_common: Hbv
Organism_taxid: 10407
Other_details: Hepatitis B Virus Core 18-27 Is Synthesized.
symmetry Space Group: P 1
R_factor 0.182 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.279 68.269 68.318 70.20 84.40 84.45
method X-Ray Diffractionresolution 2.16 Å
Gene
Ontology
ChainFunctionProcessComponent
E, B
  • cellular response to iron io...

  • Primary referenceStructural insights into the binding of hepatitis B virus core peptide to HLA-A2 alleles: Towards designing better vaccines., Liu J, Chen KY, Ren EC, Eur J Immunol. 2011 Jul;41(7):2097-106. doi: 10.1002/eji.201041370. PMID:21538979
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (3ox8.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (3ox8.pdb2.gz) 70 Kb
  • CSU: Contacts of Structural Units for 3OX8
  • Structure Factors (878 Kb)
  • Retrieve 3OX8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OX8 from S2C, [Save to disk]
  • Re-refined 3ox8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OX8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OX8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3OX8, from MSDmotif at EBI
  • Fold representative 3ox8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ox8_A] [3ox8] [3ox8_D] [3ox8_C] [3ox8_B] [3ox8_F] [3ox8_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OX8: [IGc1 ] by SMART
  • Other resources with information on 3OX8
  • Community annotation for 3OX8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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