3OXI	Transferase Transferase Inhibitor	date	Sep 21, 2010
title	Design And Synthesis Of Disubstituted Thiophene And Thiazole Inhibitors Of Jnk For The Treatment Of Neurodegenerative Di
authors	R.K.Hom, S.Bowers, J.Sealy, A.Truong, G.D.Probst, M.Neitzel, J.Nei L.Fang, L.Brogley, J.Wu, A.W.Konradi, H.Sham, G.Toth, H.Pan, N.Yao D.R.Artis
compound		source
Molecule: Mitogen-Activated Protein Kinase 10 Chain: A Fragment: Unp Residues 40 To 401 Synonym: Map Kinase 10, Mapk 10, Stress-Activated Protein K Jnk3, C-Jun N-Terminal Kinase 3, Map Kinase P49 3f12; Ec: 2.7.11.24 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Jnk3, Jnk3a, Mapk10, Prkm10 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Mitogen-Activated Protein Kinase 8 Interacting Pr Chain: J Fragment: Unp Residues 158 To 167 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mapk8ip1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.229 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.020 78.081 83.514 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	SYY BindingDB	enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Design and synthesis of disubstituted thiophene and thiazole based inhibitors of JNK., Hom RK, Bowers S, Sealy JM, Truong AP, Probst GD, Neitzel ML, Neitz RJ, Fang L, Brogley L, Wu J, Konradi AW, Sham HL, Toth G, Pan H, Yao N, Artis DR, Quinn K, Sauer JM, Powell K, Ren Z, Bard F, Yednock TA, Griswold-Prenner I, Bioorg Med Chem Lett. 2010 Dec 15;20(24):7303-7. Epub 2010 Oct 21. PMID:21071223

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk] Biological Unit Coordinates (3oxi.pdb1.gz) 56 Kb LPC: Ligand-Protein Contacts for 3OXI CSU: Contacts of Structural Units for 3OXI Structure Factors (296 Kb) Retrieve 3OXI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OXI from S2C, [Save to disk] Re-refined 3oxi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OXI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OXI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OXI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3oxi_A] [3oxi_J] [3oxi] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3OXI: [S_TKc ] by SMART

Other resources with information on 3OXI

Community annotation for 3OXI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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