3OXV	Hydrolase Hydrolase Inhibitor	date	Sep 22, 2010
title	Crystal Structure Of Hiv-1 I50v, A71 Protease In Complex Wit Protease Inhibitor Amprenavir.
authors	C.A.Schiffer, S.Mittal, R.M.Bandaranayake
compound		source
Molecule: Hiv-1 Protease Chain: B, A, D, C Synonym: Retropepsin, Pr Ec: 3.4.23.16 Engineered: Yes Mutation: Yes		Organism_scientific: Hiv-1 M:B_arv2sf2 Organism_common: Hiv-1 Organism_taxid: 11685 Strain: Sf2 Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Tap106 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pxc35
symmetry	Space Group: P 1 21 1	R_factor 0.169 R_Free 0.205
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.563 63.338 58.613 90.00 96.61 90.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	478, ACT, GOL, PO4, SO4 BindingDB	enzyme	Hydrolase E.C.3.4.23.16 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural and thermodynamic basis of amprenavir/darunavir and atazanavir resistance in HIV-1 protease with mutations at residue 50., Mittal S, Bandaranayake RM, King NM, Prabu-Jeyabalan M, Nalam MN, Nalivaika EA, Yilmaz NK, Schiffer CA, J Virol. 2013 Apr;87(8):4176-84. doi: 10.1128/JVI.03486-12. Epub 2013 Jan 30. PMID:23365446

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (3oxv.pdb1.gz) 62 Kb Biological Unit Coordinates (3oxv.pdb2.gz) 42 Kb LPC: Ligand-Protein Contacts for 3OXV CSU: Contacts of Structural Units for 3OXV Structure Factors (816 Kb) Retrieve 3OXV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OXV from S2C, [Save to disk] Re-refined 3oxv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OXV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OXV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OXV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3oxv] [3oxv_C] [3oxv_A] [3oxv_B] [3oxv_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3OXV

Community annotation for 3OXV at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---