3OY9 Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolution date
authors Hare, S., Cherepanov, P.
compound source
R_Free 0.2217
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.55
ligand GOL, MN, NH4, SO4, ZN enzyme
note 3OY9 supersedes 3L2S
A, B

Primary referenceRetroviral intasome assembly and inhibition of DNA strand transfer., Hare S, Gupta SS, Valkov E, Engelman A, Cherepanov P, Nature. 2010 Mar 11;464(7286):232-6. Epub 2010 Jan 31. PMID:20118915
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (3oy9.pdb1.gz) 216 Kb
  • LPC: Ligand-Protein Contacts for 3OY9
  • CSU: Contacts of Structural Units for 3OY9
  • Structure Factors (728 Kb)
  • Retrieve 3OY9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OY9 from S2C, [Save to disk]
  • Re-refined 3oy9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OY9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OY9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OY9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oy9_B] [3oy9_C] [3oy9_A] [3oy9_D] [3oy9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OY9
  • Community annotation for 3OY9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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