3OYV Crystal structure of an imelysin peptidase (BACOVA_03801) from Bacteroides ovatus ATCC 8483 at 1.25 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.1630
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.25
ligand CL, GOL, MSE, UNL enzyme
note 3OYV is a representative structure
Gene BACOVA
Primary referenceStructural and sequence analysis of imelysin-like proteins implicated in bacterial iron uptake., Xu Q, Rawlings ND, Farr CL, Chiu HJ, Grant JC, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Weekes D, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA, PLoS One. 2011;6(7):e21875. Epub 2011 Jul 25. PMID:21799754
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (3oyv.pdb1.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 3OYV
  • CSU: Contacts of Structural Units for 3OYV
  • Structure Factors (9962 Kb)
  • Retrieve 3OYV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OYV from S2C, [Save to disk]
  • Re-refined 3oyv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3OYV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3OYV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OYV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oyv] [3oyv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3OYV
  • Community annotation for 3OYV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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