3OZ1 Apoptosis Inhibitor date Sep 24, 2010
title Ciap1-Bir3 Domain In Complex With The Smac-Mimetic Compound
authors F.Cossu, F.Malvezzi, E.Mastrangelo, G.Canevari, M.Bolognesi, M.Mi
compound source
Molecule: Baculoviral Iap Repeat-Containing Protein 2
Chain: A, B, C, D
Fragment: Repeat 3 (Bir3) Domain, Unp Residues 251-363
Synonym: Inhibitor Of Apoptosis Protein 2, Iap-2, Hiap-2, H Iap1, Tnfr2-Traf-Signaling Complex Protein 2, Iap Homolog B Finger Protein 48;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Birc2, Api1, Iap2, Mihb, Rnf48
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a(+)
symmetry Space Group: C 2 2 2
R_factor 0.192 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.589 114.630 92.962 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand BMB, ZN enzyme
Primary referenceRecognition of Smac-mimetic compounds by the BIR3 domain of cIAP1., Cossu F, Malvezzi F, Canevari G, Mastrangelo E, Lecis D, Delia D, Seneci P, Scolastico C, Bolognesi M, Milani M, Protein Sci. 2010 Oct 15. PMID:20954235
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (3oz1.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (3oz1.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (3oz1.pdb3.gz) 39 Kb
  • Biological Unit Coordinates (3oz1.pdb4.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3OZ1
  • CSU: Contacts of Structural Units for 3OZ1
  • Structure Factors (192 Kb)
  • Retrieve 3OZ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OZ1 from S2C, [Save to disk]
  • Re-refined 3oz1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OZ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OZ1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OZ1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oz1_A] [3oz1_C] [3oz1_B] [3oz1] [3oz1_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OZ1: [BIR ] by SMART
  • Other resources with information on 3OZ1
  • Community annotation for 3OZ1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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