3P06 Hydrolase date Sep 27, 2010
title Crystal Structure Of Tellina Virus 1 Vp4 Protease In The For Intra-Molecular(Cis)Acyl-Enzyme Complex.
authors I.Y.W.Chung, M.Paetzel
compound source
Molecule: Vp4 Protein
Chain: A
Fragment: Unp Residues 637-830
Ec: 3.4.21.115
Engineered: Yes
Organism_scientific: Tellina Virus 1
Organism_taxid: 321302
Gene: Viral Protein 4 (Vp4)
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tuner (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b+
symmetry Space Group: P 64 2 2
R_factor 0.182 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.140 59.140 208.142 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand BME, CL, GOL, MSE, SO4, URE enzyme Hydrolase E.C.3.4.21.115 BRENDA
Primary referenceCrystal structure of a viral protease intramolecular acyl-enzyme complex. Insights into cis-cleavage at the VP4/VP3 junction of Tellina birnavirus., Chung IY, Paetzel M, J Biol Chem. 2011 Feb 2. PMID:21288899
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3p06.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (3p06.pdb2.gz) 122 Kb
  • Biological Unit Coordinates (3p06.pdb3.gz) 242 Kb
  • LPC: Ligand-Protein Contacts for 3P06
  • CSU: Contacts of Structural Units for 3P06
  • Structure Factors (731 Kb)
  • Retrieve 3P06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P06 from S2C, [Save to disk]
  • Re-refined 3p06 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P06
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P06, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p06] [3p06_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3P06
  • Community annotation for 3P06 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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