3P0U Crystal Structure of the ligand binding domain of human testicular receptor 4 date
authors Zhou, X.E., Suino-Powell, K.M., Xu, Y., Chan, C.W., Kruse, S.W., Reynolds, R., Engel, J.D., Xu, H.E.
compound source
symmetry
R_factor
R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
Primary referenceThe orphan nuclear receptor TR4 is a vitamin A-activated nuclear receptor., Zhou XE, Suino-Powell KM, Xu Y, Chan CW, Kruse SW, Reynolds R, Engel JD, Xu HE, J Biol Chem. 2010 Nov 9. PMID:21068381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (3p0u.pdb1.gz) 148 Kb
  • CSU: Contacts of Structural Units for 3P0U
  • Structure Factors (262 Kb)
  • Retrieve 3P0U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P0U from S2C, [Save to disk]
  • Re-refined 3p0u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3P0U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3P0U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3P0U, from MSDmotif at EBI
  • Fold representative 3p0u from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p0u_A] [3p0u] [3p0u_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P0U: [HOLI ] by SMART
    • Other resources with information on 3P0U
  • Community annotation for 3P0U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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