3P0U Signaling Protein date Sep 29, 2010
title Crystal Structure Of The Ligand Binding Domain Of Human Test Receptor 4
authors X.E.Zhou, K.M.Suino-Powell, Y.Xu, C.W.Chan, S.W.Kruse, R.Reynold J.D.Engel, H.E.Xu
compound source
Molecule: Nuclear Receptor Subfamily 2 Group C Member 2
Chain: A, B
Fragment: Ligand Binding Domain
Synonym: Orphan Nuclear Receptor Tr4, Testicular Receptor 4 Nuclear Receptor Tak1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr2c2, Tak1, Tr4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: F 2 2 2
R_factor 0.258 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.479 140.963 184.863 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
Primary referenceThe orphan nuclear receptor TR4 is a vitamin A-activated nuclear receptor., Zhou XE, Suino-Powell KM, Xu Y, Chan CW, Kruse SW, Reynolds R, Engel JD, Xu HE, J Biol Chem. 2010 Nov 9. PMID:21068381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (3p0u.pdb1.gz) 148 Kb
  • CSU: Contacts of Structural Units for 3P0U
  • Structure Factors (262 Kb)
  • Retrieve 3P0U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P0U from S2C, [Save to disk]
  • Re-refined 3p0u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P0U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P0U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3P0U, from MSDmotif at EBI
  • Fold representative 3p0u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p0u_A] [3p0u] [3p0u_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P0U: [HOLI ] by SMART
  • Other resources with information on 3P0U
  • Community annotation for 3P0U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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