3P11 Immune System date Sep 29, 2010
title Anti-Egfrher3 Fab Dl11 In Complex With Domains I-III Of The Extracellular Region
authors C.Eigenbrot, S.Shia
compound source
Molecule: Fab Dl11 Heavy Chain
Chain: H
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pw0579-3

Molecule: Fab Dl11 Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pw0579-3

Molecule: Receptor Tyrosine-Protein Kinase Erbb-3
Chain: A
Fragment: Domains I-III, Unp Residues 20-532
Synonym: Proto-Oncogene-Like Protein C-Erbb-3, Tyrosine Kin Cell Surface Receptor Her3;
Ec: 2.7.10.1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Erbb3, Her3
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.245 R_Free 0.323
crystal
cell
length a length b length c angle alpha angle beta angle gamma
208.392 48.397 130.381 90.00 127.71 90.00
method X-Ray Diffractionresolution 3.70 Å
ligand NAG enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA two-in-one antibody against HER3 and EGFR has superior inhibitory activity compared with monospecific antibodies., Schaefer G, Haber L, Crocker LM, Shia S, Shao L, Dowbenko D, Totpal K, Wong A, Lee CV, Stawicki S, Clark R, Fields C, Lewis Phillips GD, Prell RA, Danilenko DM, Franke Y, Stephan JP, Hwang J, Wu Y, Bostrom J, Sliwkowski MX, Fuh G, Eigenbrot C, Cancer Cell. 2011 Oct 18;20(4):472-86. PMID:22014573
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (321 Kb) [Save to disk]
  • Biological Unit Coordinates (3p11.pdb1.gz) 313 Kb
  • LPC: Ligand-Protein Contacts for 3P11
  • CSU: Contacts of Structural Units for 3P11
  • Structure Factors (151 Kb)
  • Retrieve 3P11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P11 from S2C, [Save to disk]
  • Re-refined 3p11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P11
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3P11, from MSDmotif at EBI
  • Fold representative 3p11 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p11_H] [3p11_L] [3p11] [3p11_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3P11 with the sequences similar proteins can be viewed for 3P11's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3P11
  • Community annotation for 3P11 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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