3P13	Isomerase	date	Sep 29, 2010
title	Complex Structure Of D-Ribose Pyranase Sa240 With D-Ribose
authors	M.Wu, L.Wang, J.Zang
compound		source
Molecule: D-Ribose Pyranase Chain: A, B, C, D Ec: 5.5.1.- Engineered: Yes		Organism_scientific: Staphylococcus Aureus Organism_taxid: 93061 Strain: Nctc 8325 Gene: Rbsd, Saouhsc_00240 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-28a
symmetry	Space Group: P 64	R_factor 0.213 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 124.270 124.270 86.210 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	RIP	enzyme	Isomerase E.C.5.5.1 BRENDA
Gene	SAOUHSC
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal structure of Sa240: A ribose pyranase homolog with partial active site from Staphylococcus aureus., Wang L, Wu M, Zang J, J Struct Biol. 2011 May;174(2):413-9. Epub 2011 Jan 27. PMID:21276853

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (3p13.pdb1.gz) 44 Kb Biological Unit Coordinates (3p13.pdb2.gz) 43 Kb LPC: Ligand-Protein Contacts for 3P13 CSU: Contacts of Structural Units for 3P13 Structure Factors (415 Kb) Retrieve 3P13 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3P13 from S2C, [Save to disk] Re-refined 3p13 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3P13

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3P13, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p13] [3p13_C] [3p13_D] [3p13_A] [3p13_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3P13

Community annotation for 3P13 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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