3P3J Lyase date Oct 05, 2010
title Human Carbonic Anhydrase II In Complex With P-(5-Ruthenoceny 3-Triazol-1-Yl)Benzenesulfonamide
authors A.J.Salmon
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonic Anhydrase II, Ca-II, Carbonate Dehydratas Carbonic Anhydrase C, Cac;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet8c
symmetry Space Group: P 1 21 1
R_factor 0.193 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.490 41.620 72.450 90.00 104.85 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand 498, GOL, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProtein crystal structures with ferrocene and ruthenocene-based enzyme inhibitors., Salmon AJ, Williams ML, Hofmann A, Poulsen SA, Chem Commun (Camb). 2012 Feb 25;48(17):2328-30. Epub 2012 Jan 18. PMID:22258283
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3p3j.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3P3J
  • CSU: Contacts of Structural Units for 3P3J
  • Structure Factors (1499 Kb)
  • Retrieve 3P3J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P3J from S2C, [Save to disk]
  • Re-refined 3p3j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P3J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P3J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P3J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p3j] [3p3j_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P3J: [Carb_anhydrase ] by SMART
  • Other resources with information on 3P3J
  • Community annotation for 3P3J at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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