3P40	Cell Adhesion	date	Oct 05, 2010
title	Crystal Structure Of Neurofascin Adhesion Complex In Space G
authors	H.Liu, X.He
compound		source
Molecule: Neurofascin Chain: A Fragment: N-Terminal Four Ig Domains (Unp Residues 25-428) Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nfasc, Kiaa0756 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_cell_line: Hi5
symmetry	Space Group: P 32 2 1	R_factor 0.273 R_Free 0.316
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.508 94.508 126.723 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	NAG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Homophilic adhesion mechanism of neurofascin, a member of the L1 family of neural cell adhesion molecules., Liu H, Focia PJ, He X, J Biol Chem. 2011 Jan 7;286(1):797-805. Epub 2010 Nov 3. PMID:21047790

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (3p40.pdb1.gz) 133 Kb LPC: Ligand-Protein Contacts for 3P40 CSU: Contacts of Structural Units for 3P40 Structure Factors (92 Kb) Retrieve 3P40 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3P40 from S2C, [Save to disk] Re-refined 3p40 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3P40 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3P40

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3P40, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p40_A] [3p40] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3P40: [IG_like] [IGc2 ] by SMART

Other resources with information on 3P40

Community annotation for 3P40 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---