3P4F Transcription date Oct 06, 2010
title Structural And Biochemical Insights Into Mll1 Core Complex A And Regulation.
authors V.Avdic, P.Zhang, S.Lanouette, A.Groulx, V.Tremblay, J.B.Brunzell F.Couture
compound source
Molecule: Wd Repeat-Containing Protein 5
Chain: A
Fragment: Unp Residues 1-308
Synonym: Bmp2-Induced 3-Kb Gene Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr5, Big3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Retinoblastoma-Binding Protein 5
Chain: B
Fragment: Unp Residues 371-381
Synonym: Rbbp-5, Retinoblastoma-Binding Protein Rbq-3
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Synthetic Peptide (New England Peptide)

Molecule: Histone-Lysine N-Methyltransferase Mll
Chain: C
Fragment: Unp Residues 3761-3770
Synonym: Zinc Finger Protein Hrx, All-1, Trithorax-Like Pro Lysine N-Methyltransferase 2a;
Ec: 2.1.1.43
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Synthetic Peptide (New England Peptide)
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.850 81.350 81.780 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand
enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and biochemical insights into MLL1 core complex assembly., Avdic V, Zhang P, Lanouette S, Groulx A, Tremblay V, Brunzelle J, Couture JF, Structure. 2011 Jan 12;19(1):101-8. PMID:21220120
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3p4f.pdb1.gz) 55 Kb
  • CSU: Contacts of Structural Units for 3P4F
  • Structure Factors (325 Kb)
  • Retrieve 3P4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P4F from S2C, [Save to disk]
  • Re-refined 3p4f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P4F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3P4F, from MSDmotif at EBI
  • Fold representative 3p4f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p4f_A] [3p4f_B] [3p4f] [3p4f_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P4F: [WD40 ] by SMART
  • Other resources with information on 3P4F
  • Community annotation for 3P4F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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