3P67 Oxidoreductase date Oct 11, 2010
title T26s Mutant Of Pentaerythritol Tetranitrate Reductase Contai Bound Acetate Molecule
authors H.S.Toogood, N.S.Scrutton
compound source
Molecule: Pentaerythritol Tetranitrate Reductase
Chain: A
Ec: 1.6.99.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Enterobacter Cloacae
Organism_taxid: 550
Strain: Pb2
Gene: Onr, Petnr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbluescript II-Ks(+)
symmetry Space Group: P 21 21 21
R_factor 0.146 R_Free 0.171
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.919 69.063 88.871 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand ACT, FMN enzyme Oxidoreductase E.C.1.6.99.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFocused directed evolution of pentaerythritol tetranitrate reductase by using automated anaerobic kinetic screening of site-saturated libraries., Hulley ME, Toogood HS, Fryszkowska A, Mansell D, Stephens GM, Gardiner JM, Scrutton NS, Chembiochem. 2010 Nov 22;11(17):2433-47. PMID:21064170
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (3p67.pdb1.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 3P67
  • CSU: Contacts of Structural Units for 3P67
  • Structure Factors (837 Kb)
  • Retrieve 3P67 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P67 from S2C, [Save to disk]
  • Re-refined 3p67 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P67 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P67
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P67, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p67_A] [3p67]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3P67
  • Community annotation for 3P67 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science