3P6Y Rna Binding Protein Rna date Oct 11, 2010
title Cf Im25-Cf Im68-Uguaa Complex
authors H.Li, S.Tong, X.Li, H.Shi, Y.Gao, H.Ge, L.Niu, M.Teng
compound source
Molecule: Cleavage And Polyadenylation Specificity Factor S
Chain: A, B, E, F, I, J, M, N
Fragment: Unp Residues 34-227
Synonym: Cleavage Factor Im 25, Cleavage And Polyadenylatio Specificity Factor 25 Kda Subunit, Cpsf 25 Kda Subunit, Nuc Diphosphate-Linked Moiety X Motif 21, Nudix Motif 21, Pre-M Cleavage Factor Im 25 Kda Subunit;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudt21, Cfim25, Cpsf25, Cpsf5
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Cleavage And Polyadenylation Specificity Factor S
Chain: C, D, G, H, K, L, O, P
Fragment: Unp Residues 80-161
Synonym: Cleavage Factor Im 68, Cleavage And Polyadenylatio Specificity Factor 68 Kda Subunit, Cf Im68, Cpsf 68 Kda Sub Mrna Cleavage Factor Im 68 Kda Subunit, Protein Hpbrii-47;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cpsf6, Cfim68
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-R(Upgpupapa)-3'
Chain: Q, R, S, T, U, V, W
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor 0.226 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.783 129.419 111.159 90.00 94.01 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
F, N, E, M, A, J, B, I


K, C, L, O, P, H, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (738 Kb) [Save to disk]
  • Biological Unit Coordinates (3p6y.pdb1.gz) 180 Kb
  • Biological Unit Coordinates (3p6y.pdb2.gz) 182 Kb
  • Biological Unit Coordinates (3p6y.pdb3.gz) 178 Kb
  • Biological Unit Coordinates (3p6y.pdb4.gz) 179 Kb
  • CSU: Contacts of Structural Units for 3P6Y
  • Structure Factors (992 Kb)
  • Retrieve 3P6Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P6Y from S2C, [Save to disk]
  • Re-refined 3p6y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3P6Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3P6Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P6Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p6y_J] [3p6y_O] [3p6y_U] [3p6y_R] [3p6y] [3p6y_L] [3p6y_M] [3p6y_H] [3p6y_A] [3p6y_F] [3p6y_C] [3p6y_Q] [3p6y_P] [3p6y_N] [3p6y_W] [3p6y_T] [3p6y_I] [3p6y_V] [3p6y_K] [3p6y_B] [3p6y_E] [3p6y_G] [3p6y_D] [3p6y_S]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P6Y: [RRM ] by SMART
    • Other resources with information on 3P6Y
  • Community annotation for 3P6Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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