3P70	Hydrolase	date	Oct 11, 2010
title	Structural Basis Of Thrombin-Mediated Factor V Activation: E Role Of The Hirudin-Like Sequence Glu666-Glu672 For Process Heavy Chain-B Domain Junction
authors	M.A.Corral-Rodriguez, P.E.Bock, E.Hernandez-Carvajal, R.Gutierr Gallego, P.Fuentes-Prior
compound		source
Molecule: Human Alpha-Thrombin, Light Chain Chain: A, C, E, G Fragment: Thrombin Light Chain Synonym: Coagulation Factor II, Thrombin Light Chain Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Purified From Blood Plasma
Molecule: Human Alpha-Thrombin, Heavy Chain Chain: B, D, F, H Fragment: Thrombin Heavy Chain Synonym: Coagulation Factor II, Thrombin Heavy Chain Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Purified From Blood Plasma
Molecule: Human Factor V, A2-B Domain Linker Chain: M, N, O, P Fragment: Factor V, A2-B Domain Linker Synonym: Activated Protein C Cofactor Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F5 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: P 1	R_factor 0.207 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.243 68.227 98.972 72.57 84.05 80.45
method	X-Ray Diffraction	resolution	2.55 Å
ligand	BEN, BGC, NA, NAG BindingDB	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
Gene Ontology	Chain Function Process Component A, E, C, G F, B, H, D
Primary reference	Structural basis of thrombin-mediated factor V activation: the Glu666-Glu672 sequence is critical for processing at the heavy chain-B domain junction., Corral-Rodriguez MA, Bock PE, Hernandez-Carvajal E, Gutierrez-Gallego R, Fuentes-Prior P, Blood. 2011 May 9. PMID:21555742

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (402 Kb) [Save to disk] Biological Unit Coordinates (3p70.pdb1.gz) 101 Kb Biological Unit Coordinates (3p70.pdb2.gz) 100 Kb Biological Unit Coordinates (3p70.pdb3.gz) 101 Kb Biological Unit Coordinates (3p70.pdb4.gz) 102 Kb LPC: Ligand-Protein Contacts for 3P70 CSU: Contacts of Structural Units for 3P70 Structure Factors (732 Kb) Retrieve 3P70 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3P70 from S2C, [Save to disk] Re-refined 3p70 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3P70

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3P70, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p70_E] [3p70_B] [3p70_N] [3p70_P] [3p70_A] [3p70_G] [3p70_H] [3p70_F] [3p70_C] [3p70] [3p70_D] [3p70_M] [3p70_O] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3P70: [Tryp_SPc ] by SMART

Other resources with information on 3P70

Community annotation for 3P70 at PDBWiki (http://pdbwiki.org)

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