OCA Atlas for 3P70

3P70

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BEN, BGC, NA, NAG BindingDB

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, C, E, G
D, H, F, B

Primary reference

Structural basis of thrombin-mediated factor V activation: the Glu666-Glu672 sequence is critical for processing at the heavy chain-B domain junction., Corral-Rodriguez MA, Bock PE, Hernandez-Carvajal E, Gutierrez-Gallego R, Fuentes-Prior P, Blood. 2011 May 9. PMID:21555742

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (402 Kb) [Save to disk]

Biological Unit Coordinates (3p70.pdb1.gz) 101 Kb

Biological Unit Coordinates (3p70.pdb2.gz) 100 Kb

Biological Unit Coordinates (3p70.pdb3.gz) 101 Kb

Biological Unit Coordinates (3p70.pdb4.gz) 102 Kb

LPC: Ligand-Protein Contacts for 3P70

CSU: Contacts of Structural Units for 3P70

Structure Factors (732 Kb)

Retrieve 3P70 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3P70 from S2C, [Save to disk]

Re-refined 3p70 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3P70 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p70] [3p70_A] [3p70_B] [3p70_C] [3p70_D] [3p70_E] [3p70_F] [3p70_G] [3p70_H] [3p70_M] [3p70_N] [3p70_O] [3p70_P]

SWISS-PROT database:

Domain found in 3P70: [Tryp_SPc ] by SMART

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