3P7Z Lipid Binding Protein date Oct 13, 2010
title Crystal Structure Of The Neurofibromin Sec14-Ph Module Conta Patient Derived Mutation I1584v
authors S.Welti, K.Scheffzek
compound source
Molecule: Neurofibromin
Chain: A, B
Synonym: Neurofibromatosis-Related Protein Nf-1, Neurofibro Truncated;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm11
symmetry Space Group: P 41 21 2
R_factor 0.216 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.061 113.061 124.612 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand NA, PEV, POP enzyme
Primary referenceStructural and biochemical consequences of NF1 associated non-truncating mutations in the Sec14-PH module of neurofibromin., Welti S, Kuhn S, D'Angelo I, Bruugger B, Kaufmann D, Scheffzek K, Hum Mutat. 2010 Nov 18. PMID:21089070
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (3p7z.pdb1.gz) 191 Kb
  • LPC: Ligand-Protein Contacts for 3P7Z
  • CSU: Contacts of Structural Units for 3P7Z
  • Structure Factors (373 Kb)
  • Retrieve 3P7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P7Z from S2C, [Save to disk]
  • Re-refined 3p7z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P7Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P7Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3P7Z, from MSDmotif at EBI
  • Fold representative 3p7z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p7z_A] [3p7z] [3p7z_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P7Z: [SEC14 ] by SMART
  • Alignments of the sequence of 3P7Z with the sequences similar proteins can be viewed for 3P7Z's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3P7Z
  • Community annotation for 3P7Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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