3P7Z	Lipid Binding Protein	date	Oct 13, 2010
title	Crystal Structure Of The Neurofibromin Sec14-Ph Module Conta Patient Derived Mutation I1584v
authors	S.Welti, K.Scheffzek
compound		source
Molecule: Neurofibromin Chain: A, B Synonym: Neurofibromatosis-Related Protein Nf-1, Neurofibro Truncated; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nf1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Codon+Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Petm11
symmetry	Space Group: P 41 21 2	R_factor 0.216 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 113.061 113.061 124.612 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.65 Å
ligand	NA, PEV, POP	enzyme
Primary reference	Structural and biochemical consequences of NF1 associated non-truncating mutations in the Sec14-PH module of neurofibromin., Welti S, Kuhn S, D'Angelo I, Bruugger B, Kaufmann D, Scheffzek K, Hum Mutat. 2010 Nov 18. PMID:21089070

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk] Biological Unit Coordinates (3p7z.pdb1.gz) 191 Kb LPC: Ligand-Protein Contacts for 3P7Z CSU: Contacts of Structural Units for 3P7Z Structure Factors (371 Kb) Retrieve 3P7Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3P7Z from S2C, [Save to disk] Re-refined 3p7z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3P7Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3P7Z

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3P7Z, from MSDmotif at EBI Fold representative 3p7z from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p7z_A] [3p7z_B] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 3P7Z with the sequences similar proteins can be viewed for 3P7Z's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 3P7Z

Community annotation for 3P7Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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