3P87 Hydrolase Dna Binding Protein date Oct 13, 2010
title Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
authors D.Bubeck, M.A.Reijns, S.C.Graham, K.R.Astell, E.Y.Jones, A.P.Jack
compound source
Molecule: Proliferating Cell Nuclear Antigen
Chain: A, B, C, D, E, F
Synonym: Pcna, Cyclin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcna
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7.7

Molecule: Ribonuclease H2 Subunit B
Chain: G, H, I, J, K, L
Fragment: Unp Residues 290-306
Synonym: Rnase H2 Subunit B, Aicardi-Goutieres Syndrome 2 P Ags2, Deleted In Lymphocytic Leukemia 8, Ribonuclease Hi Su
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans. It Correspond To Residues 290-312 Of Rnaseh2b
symmetry Space Group: P 1 21 1
R_factor 0.223 R_Free 0.248
length a length b length c angle alpha angle beta angle gamma
83.108 81.788 116.558 90.00 91.47 90.00
method X-Ray Diffractionresolution 2.99 Å
F, A, D, C, E, B

Primary referencePCNA directs type 2 RNase H activity on DNA replication and repair substrates., Bubeck D, Reijns MA, Graham SC, Astell KR, Jones EY, Jackson AP, Nucleic Acids Res. 2011 Jan 17. PMID:21245041
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • Biological Unit Coordinates (3p87.pdb1.gz) 119 Kb
  • Biological Unit Coordinates (3p87.pdb2.gz) 119 Kb
  • Biological Unit Coordinates (3p87.pdb3.gz) 233 Kb
  • CSU: Contacts of Structural Units for 3P87
  • Structure Factors (706 Kb)
  • Retrieve 3P87 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P87 from S2C, [Save to disk]
  • Re-refined 3p87 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P87 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P87
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3P87, from MSDmotif at EBI
  • Fold representative 3p87 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p87_K] [3p87] [3p87_F] [3p87_L] [3p87_J] [3p87_G] [3p87_D] [3p87_I] [3p87_H] [3p87_C] [3p87_A] [3p87_B] [3p87_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3P87
  • Community annotation for 3P87 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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