3P8C	Protein Binding	date	Oct 13, 2010
title	Structure And Control Of The Actin Regulatory Wave Complex
authors	Z.Chen, D.Borek, S.B.Padrick, T.S.Gomez, Z.Metlagel, A.M.Ismail, J D.D.Billadeau, Z.Otwinowski, M.K.Rosen
compound		source
Molecule: Cytoplasmic Fmr1-Interacting Protein 1 Chain: A Synonym: Specifically Rac1-Associated Protein 1, Sra-1, P14 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cyfip1, Kiaa0068 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
Molecule: Nck-Associated Protein 1 Chain: B Synonym: Nap 1, Membrane-Associated Protein Hem-2, P125nap1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nckap1, Hem2, Kiaa0587, Nap1 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
Molecule: Wiskott-Aldrich Syndrome Protein Family Member 1 Chain: D Synonym: Wasp Family Protein Member 1, Protein Wave-1, Verp Homology Domain-Containing Protein 1; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wasf1, Kiaa0269, Scar1, Wave1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Probable Protein Brick1 Chain: E Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: C3orf10, Hspc300, Mds027 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Abl Interactor 2 Chain: F Fragment: N-Terminal Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.188 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 97.013 113.982 327.193 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.29 Å
ligand	CL, GOL, TRS	enzyme
Gene Ontology	Chain Function Process Component A B D E SCAR complex F
Primary reference	Structure and control of the actin regulatory WAVE complex., Chen Z, Borek D, Padrick SB, Gomez TS, Metlagel Z, Ismail AM, Umetani J, Billadeau DD, Otwinowski Z, Rosen MK, Nature. 2010 Nov 25;468(7323):533-8. PMID:21107423

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (472 Kb) [Save to disk] Biological Unit Coordinates (3p8c.pdb1.gz) 453 Kb LPC: Ligand-Protein Contacts for 3P8C CSU: Contacts of Structural Units for 3P8C Structure Factors (2400 Kb) Retrieve 3P8C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3P8C from S2C, [Save to disk] Re-refined 3p8c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3P8C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3P8C

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3P8C, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p8c_D] [3p8c] [3p8c_F] [3p8c_E] [3p8c_A] [3p8c_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3P8C: [WH2 ] by SMART

Other resources with information on 3P8C

Community annotation for 3P8C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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