OCA Atlas for 3P9W

3P9W

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
A, E, G, C

Primary reference

Design of Synthetic Autonomous V Domain Libraries and Structural Analysis of a V Domain Bound to Vascular Endothelial Growth Factor., Ma X, Barthelemy PA, Rouge L, Wiesmann C, Sidhu SS, J Mol Biol. 2013 Mar 16. pii: S0022-2836(13)00168-X. doi:, 10.1016/j.jmb.2013.03.020. PMID:23507309

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]

Biological Unit Coordinates (3p9w.pdb1.gz) 40 Kb

Biological Unit Coordinates (3p9w.pdb2.gz) 39 Kb

Biological Unit Coordinates (3p9w.pdb3.gz) 40 Kb

Biological Unit Coordinates (3p9w.pdb4.gz) 39 Kb

CSU: Contacts of Structural Units for 3P9W

Structure Factors (593 Kb)

Retrieve 3P9W in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3P9W from S2C, [Save to disk]

Re-refined 3p9w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3P9W in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p9w] [3p9w_A] [3p9w_B] [3p9w_C] [3p9w_D] [3p9w_E] [3p9w_F] [3p9w_G] [3p9w_H]

SWISS-PROT database:

Domains found in 3P9W: [IGv] [PDGF ] by SMART

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