3PDM Virus date Oct 22, 2010
title Hibiscus Latent Singapore Virus
authors S.K.Tewary, S.M.Wong, K.Swaminathan
compound source
Molecule: Rna (5'-R(Pgpapa)-3')
Chain: R
Engineered: Yes
Synthetic: Yes
Other_details: Synthetic Rna

Molecule: Coat Protein
Chain: P

Organism_scientific: Hibiscus Latent Singapore Virus
Organism_taxid: 185955
symmetry Space Group: P 1
R_factor 0.096 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Fiber Diffractionresolution 3.50 Å
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceStructure of Hibiscus Latent Singapore Virus by Fiber Diffraction: A Nonconserved His122 Contributes to Coat Protein Stability., Tewary SK, Oda T, Kendall A, Bian W, Stubbs G, Wong SM, Swaminathan K, J Mol Biol. 2010 Dec 30. PMID:21195089
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3pdm.pdb1.gz) 1533 Kb
  • CSU: Contacts of Structural Units for 3PDM
  • Structure Factors (30 Kb)
  • Retrieve 3PDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PDM from S2C, [Save to disk]
  • View 3PDM in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PDM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PDM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pdm] [3pdm_R] [3pdm_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3PDM
  • Community annotation for 3PDM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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