3PDO		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	FMT, GOL	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	Bidirectional binding of invariant chain peptides to an MHC class II molecule., Gunther S, Schlundt A, Sticht J, Roske Y, Heinemann U, Wiesmuller KH, Jung G, Falk K, Rotzschke O, Freund C, Proc Natl Acad Sci U S A. 2010 Nov 29. PMID:21115828

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk] Biological Unit Coordinates (3pdo.pdb1.gz) 71 Kb LPC: Ligand-Protein Contacts for 3PDO CSU: Contacts of Structural Units for 3PDO Structure Factors (482 Kb) Retrieve 3PDO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PDO from S2C, [Save to disk] Re-refined 3pdo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PDO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3pdo] [3pdo_A] [3pdo_B] [3pdo_C] SWISS-PROT database: Domains found in 3PDO: [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART

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