3PE3 Structure of human O-GlcNAc transferase and its complex with a peptide substrate date
authors Lazarus, M.B., Nam, Y., Jiang, J., Sliz, P., Walker, S.
compound source
symmetry
R_factor
R_Free 0.2177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.78
ligand UDP BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of human O-GlcNAc transferase and its complex with a peptide substrate., Lazarus MB, Nam Y, Jiang J, Sliz P, Walker S, Nature. 2011 Jan 27;469(7331):564-7. Epub 2011 Jan 16. PMID:21240259
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (909 Kb) [Save to disk]
  • Biological Unit Coordinates (3pe3.pdb1.gz) 230 Kb
  • Biological Unit Coordinates (3pe3.pdb2.gz) 229 Kb
  • Biological Unit Coordinates (3pe3.pdb3.gz) 231 Kb
  • Biological Unit Coordinates (3pe3.pdb4.gz) 229 Kb
  • LPC: Ligand-Protein Contacts for 3PE3
  • CSU: Contacts of Structural Units for 3PE3
  • Structure Factors (1211 Kb)
  • Retrieve 3PE3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PE3 from S2C, [Save to disk]
  • Re-refined 3pe3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PE3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3PE3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PE3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pe3_B] [3pe3_A] [3pe3] [3pe3_D] [3pe3_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PE3: [TPR ] by SMART
    • Other resources with information on 3PE3
  • Community annotation for 3PE3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science