3PEG Lipid Binding Protein date Oct 26, 2010
title Crystal Structure Of Neurofibromins Sec14-Ph Module Containi Patient Derived Duplication (Td)
authors S.Welti, S.Kuen, I.D'Angelo, K.Scheffzek
compound source
Molecule: Neurofibromin
Chain: A
Synonym: Neurofibromatosis-Related Protein Nf-1, Neurofibro Truncated;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 64 2 2
R_factor 0.223 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.600 104.600 116.300 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.52 Å
ligand MG, PEV, SO4 enzyme
Primary referenceStructural and biochemical consequences of NF1 associated non-truncating mutations in the Sec14-PH module of neurofibromin., Welti S, Kuhn S, D'Angelo I, Bruugger B, Kaufmann D, Scheffzek K, Hum Mutat. 2010 Nov 18. PMID:21089070
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (3peg.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (3peg.pdb2.gz) 169 Kb
  • LPC: Ligand-Protein Contacts for 3PEG
  • CSU: Contacts of Structural Units for 3PEG
  • Structure Factors (187 Kb)
  • Retrieve 3PEG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PEG from S2C, [Save to disk]
  • Re-refined 3peg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PEG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PEG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PEG, from MSDmotif at EBI
  • Fold representative 3peg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3peg_B] [3peg_A] [3peg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PEG: [SEC14 ] by SMART
  • Other resources with information on 3PEG
  • Community annotation for 3PEG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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