3PHX	Hydrolase Protein Binding	date	Nov 04, 2010
title	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Compl Isg15
authors	M.Akutsu, Y.Ye, S.Virdee, D.Komander
compound		source
Molecule: Rna-Directed Rna Polymerase L Chain: A Fragment: Unp Residues 1-183 Synonym: Protein L, Large Structural Protein, Replicase, Transcriptase, Ubiquitin Thiolesterase, Rna-Directed Rna Po Ec: 3.4.19.12, 2.7.7.48 Engineered: Yes		Organism_scientific: Crimean-Congo Hemorrhagic Fever Virus Organism_common: Cchfv Organism_taxid: 652961 Strain: Nigeriaibar102001970 Gene: L Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ubiquitin-Like Protein Isg15 Chain: B Fragment: Unp Residues 79-156 Synonym: Interferon-Induced 15 Kda Protein, Interferon-Indu Protein, Ip17, Ubiquitin Cross-Reactive Protein, Hucrp; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Isg15, G1p2, Ucrp Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.140 R_Free 0.192
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.520 37.100 84.350 90.00 94.24 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	ACY, NEH, ZN	enzyme	Hydrolase E.C.3.4.19.12 BRENDA
note	3PHX is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Molecular basis for ubiquitin and ISG15 cross-reactivity in viral ovarian tumor domains., Akutsu M, Ye Y, Virdee S, Chin JW, Komander D, Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2228-33. Epub 2011 Jan 25. PMID:21266548

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (3phx.pdb1.gz) 89 Kb Biological Unit Coordinates (3phx.pdb2.gz) 90 Kb LPC: Ligand-Protein Contacts for 3PHX CSU: Contacts of Structural Units for 3PHX Structure Factors (1744 Kb) Retrieve 3PHX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PHX from S2C, [Save to disk] Re-refined 3phx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PHX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PHX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PHX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3phx] [3phx_A] [3phx_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3PHX: [UBQ ] by SMART

Other resources with information on 3PHX

Community annotation for 3PHX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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