3PI5 Hydrolase Hydrolase Inhibitor date Nov 05, 2010
title Crystal Structure Of Human Beta Secretase In Complex With Bf
authors J.M.Rondeau
compound source
Molecule: Beta-Secretase 1
Chain: A, B, C
Fragment: Unp Residues 48-447
Synonym: Aspartyl Protease 2, Asp2, Asp 2, Beta-Site Amyloi Precursor Protein Cleaving Enzyme 1, Beta-Site App Cleaving Memapsin-2, Membrane-Associated Aspartic Protease 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace, Bace1, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24
symmetry Space Group: P 1 21 1
R_factor 0.217 R_Free 0.249
length a length b length c angle alpha angle beta angle gamma
81.486 102.416 100.178 90.00 104.45 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 3P5 BindingDB enzyme Hydrolase E.C. BRENDA
A, C, B

Primary referenceStructure based design, synthesis and SAR of cyclic hydroxyethylamine (HEA) BACE-1 inhibitors., Rueeger H, Rondeau JM, McCarthy C, Mobitz H, Tintelnot-Blomley M, Neumann U, Desrayaud S, Bioorg Med Chem Lett. 2011 Apr 1;21(7):1942-7. Epub 2011 Feb 15. PMID:21388807
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk]
  • Biological Unit Coordinates (3pi5.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (3pi5.pdb2.gz) 67 Kb
  • Biological Unit Coordinates (3pi5.pdb3.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 3PI5
  • CSU: Contacts of Structural Units for 3PI5
  • Structure Factors (576 Kb)
  • Retrieve 3PI5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PI5 from S2C, [Save to disk]
  • Re-refined 3pi5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PI5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PI5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PI5, from MSDmotif at EBI
  • Fold representative 3pi5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pi5_A] [3pi5] [3pi5_B] [3pi5_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3PI5
  • Community annotation for 3PI5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science