3PI7 Oxidoreductase date Nov 05, 2010
title Crystal Structure Of A Putative Nadph:Quinone Reductase (Mll Mesorhizobium Loti At 1.71 A Resolution
authors Joint Center For Structural Genomics (Jcsg)
compound source
Molecule: Nadh Oxidoreductase
Chain: A
Engineered: Yes
Organism_scientific: Mesorhizobium Loti
Organism_taxid: 381
Gene: Mll3093
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hk100
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Speedet
symmetry Space Group: C 1 2 1
R_factor 0.170 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
140.301 39.969 56.173 90.00 90.34 90.00
method X-Ray Diffractionresolution 1.71 Å
ligand GOL, K, MSE, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (3pi7.pdb1.gz) 236 Kb
  • LPC: Ligand-Protein Contacts for 3PI7
  • CSU: Contacts of Structural Units for 3PI7
  • Structure Factors (4832 Kb)
  • Retrieve 3PI7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PI7 from S2C, [Save to disk]
  • Re-refined 3pi7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PI7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PI7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PI7, from MSDmotif at EBI
  • Fold representative 3pi7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pi7_A] [3pi7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3PI7
  • Community annotation for 3PI7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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