3PII Oxidoreductase date Nov 06, 2010
title Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase Wit Substrate Analogue Butyramide
authors M.Dong, B.J.Bahnson
compound source
Molecule: Alcohol Dehydrogenase
Chain: A, C, B, D
Synonym: Adh-Ht
Engineered: Yes
Mutation: Yes
Organism_scientific: Geobacillus Stearothermophilus
Organism_common: Bacillus Thermoliquefaciens
Organism_taxid: 1422
Gene: Adh-Ht
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Peg24
symmetry Space Group: P 63
R_factor 0.206 R_Free 0.286
length a length b length c angle alpha angle beta angle gamma
145.650 145.650 135.518 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand BMD, SO4, ZN enzyme Oxidoreductase E.C. BRENDA
A, D, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk]
  • Biological Unit Coordinates (3pii.pdb1.gz) 205 Kb
  • LPC: Ligand-Protein Contacts for 3PII
  • CSU: Contacts of Structural Units for 3PII
  • Structure Factors (589 Kb)
  • Retrieve 3PII in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PII from S2C, [Save to disk]
  • Re-refined 3pii structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PII in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PII
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PII, from MSDmotif at EBI
  • Fold representative 3pii from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pii_D] [3pii_C] [3pii_B] [3pii] [3pii_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3PII
  • Community annotation for 3PII at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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