3PIJ Hydrolase date Nov 06, 2010
title Beta-Fructofuranosidase From Bifidobacterium Longum - Comple Fructose
authors A.Bujacz, G.Bujacz, I.Redzynia, M.Krzepkowska-Jedrzejczak, S.Bie
compound source
Molecule: Beta-Fructofuranosidase
Chain: A, B
Fragment: Fructofuranosidase
Ec: 3.2.1.26
Engineered: Yes
Organism_scientific: Bifidobacterium Longum
Organism_taxid: 216816
Strain: Kn29.1
Gene: Ef216677
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star
Expression_system_vector_type: Pet303cthis
symmetry Space Group: P 31 2 1
R_factor 0.153 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.765 86.765 223.868 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand CL, FRU enzyme Hydrolase E.C.3.2.1.26 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of the apo form of beta-fructofuranosidase from Bifidobacterium longum and its complex with fructose., Bujacz A, Jedrzejczak-Krzepkowska M, Bielecki S, Redzynia I, Bujacz G, FEBS J. 2011 Mar 18. doi: 10.1111/j.1742-4658.2011.08098.x. PMID:21418142
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (364 Kb) [Save to disk]
  • Biological Unit Coordinates (3pij.pdb1.gz) 359 Kb
  • LPC: Ligand-Protein Contacts for 3PIJ
  • CSU: Contacts of Structural Units for 3PIJ
  • Structure Factors (1289 Kb)
  • Retrieve 3PIJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PIJ from S2C, [Save to disk]
  • Re-refined 3pij structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PIJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PIJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PIJ, from MSDmotif at EBI
  • Fold representative 3pij from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pij] [3pij_B] [3pij_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PIJ: [Glyco_32 ] by SMART
  • Other resources with information on 3PIJ
  • Community annotation for 3PIJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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